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It might just be an issue of what fields you are using to trigger the action to filter or highlight. I just made a quick example with an old dataset using the data densification method to render the bins... by setting a highlight action to trigger based on the hex lat and lon (not the table calc used to actually render the polygon on the map), I can successfully highlight with interaction on any of the vertices or the filled polygon. So, maybe just try changing what fields are used in your action to list the underlying data?
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Piggybacking on this post - I was having an issue with filtering on hexagons. With the action target set to all fields, some hexagons would filter fine, others would filter every row out. I suspect there's a bug with the way lat and long for the filter action is calculated between the sheets.I then created a 'Hex ID' which was simply the sum of the lat and long, and used that as a source/target. This fixed some hexes, and broke others.
Finally, changing the hex ID calc to "str(hex lat) and str (hex long)" and using this as the source and target filter seems to fix all of them.