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Tim- I had the same question just an hour ago and found this thread which answered my question. Currently, the published data source cannot be refreshed if developed through Prep because the Server doesn't know how the data source was created. "Run Flow" is the only option until we have more features available.
Thanks, didn't come across that in my searches. Good to see they're working on it, but it seems like a blatant omission now that it's out of beta.
Couldn't agree more.