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Well, you can't, even if you wanted to. When Data Server is used as a data source (published extract), there is no option to set the schedule when publishing a workbook based on that extract (see screenshot, top) compared to a non-data-server workbook (bottom).
The schedule is set when publishing the extract.
Ah - that makes sense - I think I got confused because I had another data source on the same workbook. In that case - the schedule option does pop up, and the Server source is still shown - so it almost looks like you are scheduling both of them.
So - I can assume if I set that schedule - that it only applies to the other data source - and will not reschedule the Tableau Server data source.