I'm still struggling to understand how you get the final crosstab. The header looks like the first column of the second crosstab? What do the values represent?
Perhaps you could post the data in Excel?
And you ultimate goal is a scatter plot, not a crosstab? In this case, both axes will have to be continuous. You can convert A, B, C, ... to continuous, but the data may make a difference in how you do this.